biotite.sequence.io.gff

This subpackage is used for reading and writing sequence features in the Generic Feature Format 3 (GFF3).

It provides the GFFFile class, a low-level line-based interface to this format, and high-level functions for extracting Annotation objects.

Content

GFFFile

This class represents a file in Generic Feature Format 3 (GFF3) format.

get_annotation

Parse a GFF3 file into an Annotation.

set_annotation

Write an Annotation object into a GFF3 file.