biotite.sequence.io.fastq.get_sequence¶
- biotite.sequence.io.fastq.get_sequence(fastq_file, header=None)[source]¶
Get a sequence and quality scores from a FastqFile instance.
- Parameters
- fastq_fileFastqFile
The FastqFile to be accessed.
- headerstr, optional
The identifier to get the sequence and scores from. By default, the first sequence of the file is returned.
- Returns
- sequenceNucleotideSequence
The requested sequence.
- scoresndarray, dtype=int
The requested scores.
