biotite.application

Application classes

Application This class is a wrapper around an external piece of runnable software in any sense.
WebApp The base class for all web based applications.
LocalApp The base class for all locally installed applications.
MSAApp Perform a multiple sequence alignment.

Miscellaneous

AppState This enum type represents the app states of an application.
AppStateError Indicate that the application lifecycle was violated.
RuleViolationError Indicates that the user guidelines of the web application would be violated, if the program continued.
requires_state A decorator for methods of Application subclasses that raises an AppStateError in case the method is called, when the Application is not in the specified AppState.

Subpackages

biotite.application.dssp A subpackage for protein secondary structure annotation using DSSP.
biotite.application.clustalo A subpackage for multiple sequence alignments using Clustal-Omega.
biotite.application.blast A subpackage for heuristic local alignments against a large database using BLAST.
biotite.application.mafft A subpackage for multiple sequence alignments using MAFFT.
biotite.application.muscle A subpackage for multiple sequence alignments using MUSCLE.