biotite.application.viennarna

A subpackage that provides interfaces to the ViennaRNA software package.

Secondary structures can be predicted using RNAfold and plotted using RNAplot.

Content

RNAfoldApp

Compute the minimum free energy secondary structure of a ribonucleic acid sequence using ViennaRNA's RNAfold software.

RNAplotApp

Get coordinates for a 2D representation of any unknotted RNA structure using ViennaRNA's RNAplot.