biotite.sequence.io.fastq
This subpackage is used for reading and writing sequencing data
using the popular FASTQ format.
This package contains the FastqFile
, which provides a
dictionary like interface to FASTQ files, with the sequence identifer
strings being the keys and the sequences and quality scores being the
values.
Content
FastqFile
|
This class represents a file in FASTQ format. |
get_sequence
|
Get a sequence and quality scores from a FastqFile instance. |
get_sequences
|
Get a dictionary from a FastqFile instance, where identifiers are keys and sequence-score-tuples are values. |
set_sequence
|
Set a sequence and a quality score array in a FastqFile instance. |
set_sequences
|
Set sequences in a FastqFile instance from a dictionary. |