Examples¶

This gallery shows examples of possible use cases of Biotite. Some of them are real world examples, others are fictional applications.

Structures¶

../../_images/sphx_glr_diameter_thumb.png

Calculation of protein diameter¶

../../_images/sphx_glr_adjacency_matrix_thumb.png

Construction of an adjacency matrix¶

../../_images/sphx_glr_ramachandran_thumb.png

Ramachandran plot of dynein motor domain¶

../../_images/sphx_glr_domain_hbonds_thumb.png

Hydrogen bonds between protein domains¶

../../_images/sphx_glr_mmtf_trajectory_thumb.png

MMTF as trajectory format¶

../../_images/sphx_glr_residue_chirality_thumb.png

Determination of amino acid enantiomers¶

../../_images/sphx_glr_ku_superimposition_thumb.png

Superimposition of two protein structures¶

../../_images/sphx_glr_mmtf_archive_noexec_thumb.png

Creating an MMTF based PDB archive¶

../../_images/sphx_glr_pdb_statistics_thumb.png

Annual releases of PDB structures¶

../../_images/sphx_glr_solvation_shells_thumb.png

Solvation shells of sodium and chloride ions¶

../../_images/sphx_glr_gap_bars_thumb.png

Missing residues in protein structures of DNA-PKcs¶

../../_images/sphx_glr_md_analysis_thumb.png

Basic analysis of MD simulation¶

../../_images/sphx_glr_disulfide_bonds_thumb.png

Detection of disulfide bonds¶

../../_images/sphx_glr_pb_alignment_thumb.png

Structural alignment of lysozyme variants using ‘Protein Blocks’¶

../../_images/sphx_glr_transketolase_sse_thumb.png

Four ways to get the secondary structure of a protein¶

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