A comprehensive library for computational molecular biology
This gallery shows examples of possible use cases of Biotite. Some of them are real world examples, others are fictional applications.
Sequence logo of the Anderson promoter collection¶
Pairwise sequence alignment of Avidin with Streptavidin¶
Bionigma style multiple sequence alignment¶
Dendrogram of the BLOSUM62 matrix¶
Calculation of codon usage¶
Biotite color schemes¶
Biotite color schemes for protein sequences¶
Comparative genome assembly of SARS-CoV-2 B.1.1.7 variant¶
Genome comparison between chloroplasts and cyanobacteria¶
Finding homologs of a gene in a genome¶
Homology of G-protein coupled receptors¶
Hydropathy and conservation of HCN channels¶
Similarity of HCN and related channels¶
Multiple sequence alignment of Cas9 homologs¶
Conservation of LexA DNA-binding site¶
Statistics of local alignments and the E-value¶
Sequence comparison of bacterial luciferases¶
Feature map of a synthetic operon¶
Identification of potential open reading frames¶
Comparison of human PI3K family¶
Plasmid map of a pET15 vector¶
Visualization of a custom plasmid¶
Quality control of sequencing data¶
Identification of the ribosomal binding site¶
Quality of sequence reads¶
Visualization of region in proximity to lac operon¶
Mutual information as measure for coevolution of residues¶
Domains of bacterial sigma factors¶
Polymorphisms in the THCA synthase gene¶
Construction of an adjacency matrix¶
Plotting the base pairs of a tRNA-like-structure¶
Biological assembly of a structure¶
Contact sites of protein-DNA interaction¶
Calculation of protein diameter¶
Detection of disulfide bonds¶
Docking biotin to streptavidin¶
Hydrogen bonds between protein domains¶
Missing residues in protein structures of DNA-PKcs¶
Visualization of glycosylated amino acids¶
Superimposition of two protein structures¶
Identification of lipid bilayer leaflets¶
Leontis-Westhof Nomenclature¶
Basic analysis of a MD simulation¶
Creating an MMTF based PDB archive¶
MMTF as trajectory format¶
Molecular visualization of caffeine¶
Visualization of normal modes from an elastic network model¶
Structural alignment of lysozyme variants using ‘Protein Blocks’¶
Annual releases of PDB structures¶
Partial charge distribution¶
Assembly of a straight peptide from sequence¶
Ramachandran plot of dynein motor domain¶
Determination of amino acid enantiomers¶
Creation of an amino acid rotamer library¶
Arrangement of beta-sheets¶
Solvation shells of sodium and chloride ions¶
Secondary structure during an MD simulation¶
Comparison of a tRNA-like-structure with a tRNA¶
Four ways to get the secondary structure of a protein¶
Cavity solvation in different states of HCN4¶
Visualization of Watson-Crick base pairs¶
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