biotite.sequence.io.genbank

This subpackage is used for reading/writing information (especially sequence features) from/to files in the GenBank and GenPept format.

Content

GenBankFile	This class represents a file in GenBank format (including GenPept).
MultiFile	This class represents a file in GenBank or GenPept format, that contains multiple entries, for more than one UID.
get_accession	Parse the ACCESSION field of a GenBank or GenPept file.
get_annotated_sequence	Get an annotated sequence by combining the ANNOTATION and ORIGIN fields of a GenBank file.
get_annotation	Get the sequence annotation from the FEATURES field of a GenBank file.
get_db_link	Parse the DBLINK field of a GenBank or GenPept file.
get_definition	Parse the DEFINITION field of a GenBank or GenPept file.
get_gi	Parse the GI from the VERSION field of a GenBank or GenPept file.
get_locus	Parse the LOCUS field of a GenBank or GenPept file.
get_raw_sequence	Get the raw sequence string from the ORIGIN field of a GenBank file.
get_sequence	Get the sequence from the ORIGIN field of a GenBank file.
get_source	Parse the SOURCE field of a GenBank or GenPept file.
get_version	Parse the version from the VERSION field of a GenBank or GenPept file.
set_annotated_sequence	Set the FEATURES and ORIGIN fields of a GenBank file with the annotation and sequence of an annotated sequence.
set_annotation	Set the FEATURES field of a GenBank file with an annotation.
set_locus	Set the LOCUS field of a GenBank file.
set_sequence	Set the ORIGIN field of a GenBank file with a sequence.