biotite.application.sra

A subpackage for obtaining sequencing data from the NCBI sequence read archive (SRA).

It comprises two central classes: FastqDumpApp downloads sequence reads in FASTQ format. If only sequences (and no scores) are required FastaDumpApp writes sequence reads into FASTA format.

Content

FastaDumpApp	Fetch sequencing data from the NCBI sequence read archive (SRA) using sra-tools.
FastqDumpApp	Fetch sequencing data from the NCBI sequence read archive (SRA) using sra-tools.