biotite.structure.io.pdbx.get_sequence¶
- biotite.structure.io.pdbx.get_sequence(pdbx_file, data_block=None)[source]¶
Get the protein and nucleotide sequences from the
entity_poly.pdbx_seq_one_letter_code_can
entry.Supported polymer types (
_entity_poly.type
) are:'polypeptide(D)'
,'polypeptide(L)'
,'polydeoxyribonucleotide'
,'polyribonucleotide'
and'polydeoxyribonucleotide/polyribonucleotide hybrid'
. Uracil is converted to Thymine.- Parameters
- pdbx_fileCIFFile or CIFBlock or BinaryCIFFile or BinaryCIFBlock
The file object.
- data_blockstr, optional
The name of the data block. Default is the first (and most times only) data block of the file. If the data block object is passed directly to pdbx_file, this parameter is ignored.
- Returns
- sequenceslist of Sequence
The protein and nucleotide sequences for each entity (equivalent to chains in most cases).
Gallery¶
Mutual information as measure for coevolution of residues