biotite.sequence.io

A subpackage for reading and writing sequence related data.

Content

load_sequence

Load a sequence from a sequence file without the need to manually instantiate a File object.

load_sequences

Load multiple sequences from a sequence file without the need to manually instantiate a File object.

save_sequence

Save a sequence into a sequence file without the need to manually instantiate a File object.

save_sequences

Save multiple sequences into a sequence file without the need to manually instantiate a File object.

Subpackages

biotite.sequence.io.fasta

This subpackage is used for reading and writing sequence objects using the popular FASTA format.

biotite.sequence.io.genbank

This subpackage is used for reading/writing information (especially sequence features) from/to files in the GenBank and GenPept format.

biotite.sequence.io.gff

This subpackage is used for reading and writing sequence features in the Generic Feature Format 3 (GFF3).

biotite.sequence.io.fastq

This subpackage is used for reading and writing sequencing data using the popular FASTQ format.