biotite.database.rcsb.StructureQuery¶

class biotite.database.rcsb.StructureQuery(pdb_id, chain=None, assembly=None, strict=True)[source]¶

Bases: SingleQuery

A query for protein/DNA/RNA molecules with structural similarity to the query structure.

Either the chain or assembly ID of the query structure must be specified.

Parameters

pdb_idstr: The PDB ID of the query structure.
chainstr, optional: The chain ID (more exactly asym_id) of the query structure.
assemblystr, optional: The assembly ID (assembly_id) of the query structure.
strictbool, optional: If true, structure comparison is strict, otherwise it is relaxed.

Examples

>>> query = StructureQuery("1L2Y", chain="A")
>>> print(sorted(search(query)))
['1L2Y', '1RIJ', '2JOF', '2LDJ', '2M7D', '7MQS']

get_content()¶

Get the query content, i.e. the data belonging to the 'query' attribute in the RCSB search API.

This content is converted into JSON by the search() and count() functions.

Returns