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Get a list of all residues/compound names in the PDB chemical components dictionary. |
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Get a tuple of amino acid three-letter codes according to the PDB Chemical Component Dictionary [#Westbrook2015]_. |
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Get the |
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Get a dictionary containing all atoms inside a given residue that form a bond. |
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Get a tuple of carbohydrate three-letter codes according to the PDB Chemical Component Dictionary [#Westbrook2015]_. |
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Get the full name of a residue/compound from the up to 3-letter residue name, based on the PDB chemical components dictionary. |
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Get the linking type of a residue/compound, based on the PDB chemical components dictionary. |
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Calculate the mass for the given object. |
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Get a tuple of nucleotide three-letter codes according to the PDB Chemical Component Dictionary [#Westbrook2015]_. |
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Get an atom array, representing the residue with the given name. |
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Get an index array for an input |
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Estimate the Van-der-Waals radius of an non-hydrogen atom, that includes the radius added by potential bonded hydrogen atoms. |
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Get the Van-der-Waals radius of an atom from the given element. |