biotite.structure.AffineTransformation¶
- class biotite.structure.AffineTransformation(center_translation, rotation, target_translation)[source]¶
Bases:
objectAn affine transformation, consisting of translations and a rotation.
- Parameters
- center_translationndarray, shape=(3,) or shape=(m,3), dtype=float
The translation vector for moving the centroid into the origin.
- rotationndarray, shape=(3,3) or shape=(m,3,3), dtype=float
The rotation matrix.
- target_translationndarray, shape=(m,3), dtype=float
The translation vector for moving the structure onto the fixed one.
- Attributes
- center_translation, rotation, target_translationndarray
Same as the parameters.
- apply(atoms)¶
Apply this transformation on the given structure.
- Parameters
- atomsAtomArray or AtomArrayStack or ndarray, shape(n,), dtype=float or ndarray, shape(m,n), dtype=float
The structure to apply the transformation on.
- Returns
- transformedAtomArray or AtomArrayStack or ndarray, shape(n,), dtype=float or ndarray, shape(m,n), dtype=float
A copy of the atoms structure, with transformations applied. Only coordinates are returned, if coordinates were given in atoms.
