biotite.sequence.phylo

Data structures

Tree

A Tree represents a rooted tree (e.g.

TreeNode

TreeNode objects are part of a rooted tree (e.g.

Clustering algorithms

upgma

Perform hierarchical clustering using the unweighted pair group method with arithmetic mean (UPGMA).

neighbor_joining

Perform hierarchical clustering using the neighbor joining algorithm [1,2]_.

Miscellaneous

TreeError

An exception that occurs in context of tree topology.

as_binary

Convert a tree into a binary tree.