biotite.Copyable¶

class biotite.Copyable[source]¶

Bases: object

Base class for all objects, that should be copyable.

The public method copy() first creates a fresh instance of the class of the instance, that is copied via the __copy_create__() method. All variables, that could not be set via the constructor, are then copied via __copy_fill__(), starting with the method in the uppermost base class and ending with the class of the instance to be copied.

This approach solves the problem of encapsulated variables in superclasses.

copy()¶

Create a deep copy of this object.

Returns

copy: A copy of this object.

Gallery¶

Sequence logo of the Anderson promoter collection¶

Pairwise sequence alignment of Avidin with Streptavidin — Pairwise sequence alignment of Avidin with Streptavidin¶

Calculation of codon usage — Calculation of codon usage¶

Biotite color schemes for protein sequences — Biotite color schemes for protein sequences¶

Comparative genome assembly of SARS-CoV-2 B.1.1.7 variant — Comparative genome assembly of SARS-CoV-2 B.1.1.7 variant¶

Homology of G-protein coupled receptors — Homology of G-protein coupled receptors¶

Hydropathy and conservation of HCN channels — Hydropathy and conservation of HCN channels¶

Similarity of HCN and related channels — Similarity of HCN and related channels¶

Statistics of local alignments and the E-value — Statistics of local alignments and the E-value¶

Sequence comparison of bacterial luciferases — Sequence comparison of bacterial luciferases¶

Feature map of a synthetic operon — Feature map of a synthetic operon¶

Comparison of human PI3K family — Comparison of human PI3K family¶

Visualization of a custom plasmid — Visualization of a custom plasmid¶

Polymorphisms in the THCA synthase gene — Polymorphisms in the THCA synthase gene¶

Detection of disulfide bonds — Detection of disulfide bonds¶

Superimposition of two protein structures — Superimposition of two protein structures¶

MMTF as trajectory format — MMTF as trajectory format¶

Structural alignment of lysozyme variants using 'Protein Blocks' — Structural alignment of lysozyme variants using ‘Protein Blocks’¶

Assembly of a straight peptide from sequence — Assembly of a straight peptide from sequence¶

Four ways to get the secondary structure of a protein — Four ways to get the secondary structure of a protein¶

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