biotite.Copyable

class biotite.Copyable

Bases: object

Base class for all objects, that should be copyable.

The public method copy() first creates a fresh instance of the class of the instance, that is copied via the __copy_create__() method. All variables, that could not be set via the constructor, are then copied via __copy_fill__(), starting with the method in the uppermost base class and ending with the class of the instance to be copied.

This approach solves the problem of encapsulated variables in superclasses.

copy()

Create a deep copy of this object.

Returns

copy

A copy of this object.

Gallery

Sequence logo of the Anderson promoter collection

Sequence logo of the Anderson promoter collection

Pairwise sequence alignment of Avidin with Streptavidin

Pairwise sequence alignment of Avidin with Streptavidin

Calculation of codon usage

Calculation of codon usage

Biotite color schemes for protein sequences

Biotite color schemes for protein sequences

Quantifying gene expression from RNA-seq data

Quantifying gene expression from RNA-seq data

Comparative genome assembly of SARS-CoV-2 B.1.1.7 variant

Comparative genome assembly of SARS-CoV-2 B.1.1.7 variant

Homology of G-protein coupled receptors

Homology of G-protein coupled receptors

Hydropathy and conservation of HCN channels

Hydropathy and conservation of HCN channels

Similarity of HCN and related channels

Similarity of HCN and related channels

Statistics of local alignments and the E-value

Statistics of local alignments and the E-value

Sequence comparison of bacterial luciferases

Sequence comparison of bacterial luciferases

Feature map of a synthetic operon

Feature map of a synthetic operon

Comparison of human PI3K family

Comparison of human PI3K family

Visualization of a custom plasmid

Visualization of a custom plasmid

Plot epitope mapping data onto protein sequence alignments

Plot epitope mapping data onto protein sequence alignments

Polymorphisms in the THCA synthase gene

Polymorphisms in the THCA synthase gene

Detection of disulfide bonds

Detection of disulfide bonds

Superimposition of two protein structures

Superimposition of two protein structures

BinaryCIF as trajectory format

BinaryCIF as trajectory format

Structural alignment of lysozyme variants using ‘Protein Blocks’

Structural alignment of lysozyme variants using 'Protein Blocks'

Assembly of a straight peptide from sequence

Assembly of a straight peptide from sequence

Three ways to get the secondary structure of a protein

Three ways to get the secondary structure of a protein