biotite.application_v2.viennarna

A subpackage that provides interfaces to the ViennaRNA software package.

Secondary structures can be predicted using a variety of folding programs (fold) and plotted using RNAplot.

Application interfaces

FoldApp	A handle to ViennaRNA's RNAfold software.
SuboptApp	A handle to ViennaRNA's RNAsubopt software.
PKplexApp	A handle to ViennaRNA's RNAPKplex software.
LfoldApp	A handle to ViennaRNA's RNALfold software.
CofoldApp	A handle to ViennaRNA's RNAcofold software.
MultifoldApp	A handle to ViennaRNA's RNAmultifold software.
DuplexApp	A handle to ViennaRNA's RNAduplex software.
PlexApp	A handle to ViennaRNA's RNAplex software.
AlifoldApp	A handle to ViennaRNA's RNAalifold software.
LalifoldApp	A handle to ViennaRNA's RNALalifold software.
AliduplexApp	A handle to ViennaRNA's RNAaliduplex software.
EvalApp	A handle to ViennaRNA's RNAeval software.
PlotApp	A handle to ViennaRNA's RNAplot.

Result classes

FoldedRNA	The predicted secondary structure of a single ribonucleic acid sequence.
CofoldedRNA	The predicted secondary structure of a complex of multiple ribonucleic acid strands.
FoldedAlignment	The predicted consensus secondary structure of an alignment of ribonucleic acid sequences.
CofoldedAlignment	The predicted consensus secondary structure of a complex of multiple ribonucleic acid alignments.