Extensions#

This page shows Biotite’s extension packages: These are packages that build upon Biotite’s functionality, but are separate Python packages that are developed independently.

Gecos

An automatic generator for alignment color schemes based on substitution matrices

Hydride

Prediction of hydrogen positions in arbitrary molecular models

fastpdb

A high performance drop-in replacement for Biotite’s PDBFile

Springcraft

Investigation of molecular dynamics using elastic network models

Ammolite

An interface between Biotite and the PyMOL biomolecular visualization software

Molmarbles

An interface between Biotite and the OpenMM molecular dynamics simulation library