.. This source code is part of the Biotite package and is distributed
   under the 3-Clause BSD License. Please see 'LICENSE.rst' for further
   information.

.. raw:: html

    <style>
    /* Custom class to get border around logos */
    .extension-logo {
        padding: 20px;
        height: 150px;
        /* Enforce correct aspect ratio for bitmap graphics */
        object-fit: contain;
        width: 100%;
    }
    </style>

Extensions
==========

This page shows *Biotite*'s extension packages:
These are packages that build upon *Biotite*'s functionality, but are separate
Python packages that are developed independently.

.. grid:: 1 2 3 3
    :gutter: 2

    .. grid-item-card:: Gecos
        :link: https://gecos.biotite-python.org/
        :img-top: https://raw.githubusercontent.com/biotite-dev/gecos/master/doc/static/assets/general/gecos_icon.svg
        :class-img-top: extension-logo

        An automatic generator for alignment color schemes based on substitution matrices

    .. grid-item-card:: Hydride
        :link: https://hydride.biotite-python.org/
        :img-top: https://raw.githubusercontent.com/biotite-dev/hydride/master/doc/static/assets/hydride_icon.svg
        :class-img-top: extension-logo

        Prediction of hydrogen positions in arbitrary molecular models

    .. grid-item-card:: fastpdb
        :link: https://github.com/biotite-dev/fastpdb
        :img-top: https://raw.githubusercontent.com/biotite-dev/fastpdb/main/icon.svg
        :class-img-top: extension-logo

        A high performance drop-in replacement for Biotite's PDBFile

    .. grid-item-card:: Springcraft
        :link: https://springcraft.biotite-python.org/
        :img-top: https://raw.githubusercontent.com/biotite-dev/springcraft/master/doc/static/assets/springcraft_logo.svg
        :class-img-top: extension-logo

        Investigation of molecular dynamics using elastic network models

    .. grid-item-card:: pepp'r
        :link: https://proximabio.com/
        :img-top: https://raw.githubusercontent.com/aivant/peppr/refs/heads/main/docs/static/assets/general/icon.svg
        :class-img-top: extension-logo

        Evaluation of predicted poses against reference structures

    .. grid-item-card:: Pocketeer
        :link: https://pocketeer.readthedocs.io/
        :img-top: https://raw.githubusercontent.com/cch1999/pocketeer/main/docs/assets/logo_nameless.png
        :class-img-top: extension-logo

        A suite for detecting and working with protein pockets