`SearchType`#

class biotite.application_v2.mmseqs.SearchType(*values)[source]#

Bases: IntEnum

Values accepted by the search_type option.

Attributes:

AUTO: Detect the type from the database.
AMINO_ACID: Align protein sequences to protein sequences.
TRANSLATED: Translate the nucleotide sequences and align the products.
NUCLEOTIDE: Align nucleotide sequences to nucleotide sequences.
TRANSLATED_NUCLEOTIDE: Align translated queries to nucleotide targets.

AUTO = 0#

AMINO_ACID = 1#

TRANSLATED = 2#

NUCLEOTIDE = 3#

TRANSLATED_NUCLEOTIDE = 4#