CoverageMode#
- class biotite.application_v2.mmseqs.CoverageMode(*values)[source]#
Bases:
IntEnumValues accepted by the
cov_modeoption.The threshold itself is given by the
coption.- Attributes:
- QUERY_AND_TARGET
The alignment must cover the given fraction of both sequences.
- TARGET
The alignment must cover the given fraction of the target sequence.
- QUERY
The alignment must cover the given fraction of the query sequence.
- TARGET_LENGTH_IN_QUERY
The target sequence must have the given fraction of the query length.
- QUERY_LENGTH_IN_TARGET
The query sequence must have the given fraction of the target length.
- SHORTER_IN_LONGER
The shorter sequence must have the given fraction of the longer length.
- QUERY_AND_TARGET = 0#
- TARGET = 1#
- QUERY = 2#
- TARGET_LENGTH_IN_QUERY = 3#
- QUERY_LENGTH_IN_TARGET = 4#
- SHORTER_IN_LONGER = 5#