MSAFormatMode#
- class biotite.application_v2.mmseqs.MSAFormatMode(*values)[source]#
Bases:
IntEnumOutput modes accepted by the
result2msacommand.- Attributes:
- COMPACT_A3M
The binary cA3M format.
- COMPACT_A3M_WITH_CONSENSUS
The binary cA3M format, including the consensus sequence.
- FASTA
Aligned FASTA, i.e. all sequences are padded with gaps to equal length.
- FASTA_WITH_INFO
Aligned FASTA, preceded by a summary header.
- STOCKHOLM
A Stockholm flat file instead of a database.
- A3M
The A3M format, i.e. insertions into the query appear as lower case letters instead of as gaps in the other sequences.
- A3M_WITH_INFO
The A3M format, including the alignment information.
- COMPACT_A3M = 0#
- COMPACT_A3M_WITH_CONSENSUS = 1#
- FASTA = 2#
- FASTA_WITH_INFO = 3#
- STOCKHOLM = 4#
- A3M = 5#
- A3M_WITH_INFO = 6#