biotite.sequence.io#

A subpackage for reading and writing sequence related data.

Content#

load_sequence

Load a sequence from a sequence file without the need to manually instantiate a File object.

load_sequences

Load multiple sequences from a sequence file without the need to manually instantiate a File object.

save_sequence

Save a sequence into a sequence file without the need to manually instantiate a File object.

save_sequences

Save multiple sequences into a sequence file without the need to manually instantiate a File object.

Subpackages#

biotite.sequence.io.fastq

This subpackage is used for reading and writing sequencing data using the popular FASTQ format.

biotite.sequence.io.genbank

This subpackage is used for reading/writing information (especially sequence features) from/to files in the GenBank and GenPept format.

biotite.sequence.io.fasta

This subpackage is used for reading and writing sequence objects using the popular FASTA format.

biotite.sequence.io.gff

This subpackage is used for reading and writing sequence features in the Generic Feature Format 3 (GFF3).