biotite.application.sra
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A subpackage for obtaining sequencing data from the NCBI sequence read archive (SRA).
It comprises two central classes:
FastqDumpApp
downloads sequence reads in FASTQ format.
If only sequences (and no scores) are required FastaDumpApp
writes sequence reads into FASTA format.
Content#
Fetch sequencing data from the NCBI sequence read archive (SRA) using sra-tools. |
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Fetch sequencing data from the NCBI sequence read archive (SRA) using sra-tools. |