biotite.application.sra#

A subpackage for obtaining sequencing data from the NCBI sequence read archive (SRA).

It comprises two central classes: FastqDumpApp downloads sequence reads in FASTQ format. If only sequences (and no scores) are required FastaDumpApp writes sequence reads into FASTA format.

Content#

FastaDumpApp

Fetch sequencing data from the NCBI sequence read archive (SRA) using sra-tools.

FastqDumpApp

Fetch sequencing data from the NCBI sequence read archive (SRA) using sra-tools.