set_alignment

biotite.sequence.io.clustal.set_alignment(clustal_file: ClustalFile, alignment: Alignment, seq_names: Iterable[str], line_length: int = 60) → None

Fill a ClustalFile with gapped sequence strings from an alignment.

Parameters:

clustal_fileClustalFile

The ClustalFile to be accessed.

alignmentAlignment

The alignment to be set.

seq_namesiterable object of str

The names for the sequences in the alignment. Must have the same length as the sequence count in alignment.

line_lengthint, optional

The number of sequence characters per line in each block. Default is 60.