array

biotite.structure.array(atoms)

Create an AtomArray from a list of Atom.

Parameters:

atomsiterable object of Atom

The atoms to be combined in an array. All atoms must share the same annotation categories.

Returns:

arrayAtomArray

The listed atoms as array.

Examples

Creating an atom array from atoms:

>>> atom1 = Atom([1,2,3], chain_id="A")
>>> atom2 = Atom([2,3,4], chain_id="A")
>>> atom3 = Atom([3,4,5], chain_id="B")
>>> atom_array = array([atom1, atom2, atom3])
>>> print(atom_array)
    A       0                       1.000    2.000    3.000
    A       0                       2.000    3.000    4.000
    B       0                       3.000    4.000    5.000