`set_sequence`#

biotite.sequence.io.fasta.set_sequence(fasta_file: FastaFile, sequence: Sequence[str], header: str | None = None, as_rna: bool = False) → None[source]#

Set a sequence in a FastaFile instance.

Parameters:

fasta_fileFastaFile: The FastaFile to be accessed.
sequenceSequence: The sequence to be set.
headerstr, optional: The header for the sequence. Default is 'sequence'.
as_rnabool, optional: If set to true, 'T' will be replaced by 'U', if a NucleotideSequence was given.

Raises:

ValueError: If the sequence’s alphabet uses symbols other than single characters.

Gallery#

Comparative genome assembly

Comparative genome assembly