set_alignment

biotite.sequence.io.fasta.set_alignment(fasta_file: FastaFile, alignment: Alignment, seq_names: list[str]) → None

Fill a FastaFile with gapped sequence strings from an alignment.

Parameters:

fasta_fileFastaFile

The FastaFile to be accessed.

alignmentAlignment

The alignment to be set.

seq_namesiterable object of str

The names for the sequences in the alignment. Must have the same length as the sequence count in alignment.