get_db_link

biotite.sequence.io.genbank.get_db_link(gb_file)

Parse the DBLINK field of a GenBank or GenPept file.

Parameters:

gb_fileGenBankFile

The GenBank file to read the DBLINK field from.

Returns:

link_dictdict

A dictionary storing the database links, with the database name as key, and the corresponding ID as value.

Examples

>>> import os.path
>>> file = GenBankFile.read(os.path.join(path_to_sequences, "ec_bl21.gb"))
>>> for key, val in get_db_link(file).items():
...     print(key, ":", val)
BioProject : PRJNA20713
BioSample : SAMN02603478