hbond_frequency#
- biotite.structure.hbond_frequency(mask)[source]#
Get the relative frequency of each hydrogen bond in a multi-model structure.
The frequency is the amount of models, where the respective bond exists divided by the total amount of models.
- Parameters:
- mask: ndarray, dtype=bool, shape=(m,n)
Input mask obtained from hbond function.
- Returns:
- ndarray, dtype=Float
For each individual interaction n of the mask, returns the percentage of models m, in which this hydrogen bond is present.
See also
Examples
>>> triplets, mask = hbond(atom_array_stack) >>> freq = hbond_frequency(mask) >>> print(freq) [0.263 0.289 0.105 0.105 0.237 0.026 0.053 0.395 1.000 1.000 1.000 0.026 0.421 0.026 0.026 0.316 0.816 0.026 0.921 0.026 0.342 0.026 0.105 0.026 0.132 0.053 0.026 0.158 0.026 0.868 0.211 0.026 0.921 0.316 0.079 0.237 0.105 0.421 0.079 0.026 1.000 0.053 0.132 0.026 0.184]
