to_topology

biotite.interface.openmm.to_topology(atoms: AtomArray[Any] | AtomArrayStack[Any, Any]) → Topology

Create a openmm.app.topology.Topology from an AtomArray or AtomArrayStack.

Parameters:

atomsAtomArray or AtomArrayStack

The structure to be converted. An associated BondList is required.

Returns:

topologyTopology

The created openmm.app.topology.Topology.