biotite.sequence.io.fastq

This subpackage is used for reading and writing sequencing data using the popular FASTQ format.

This package contains the FastqFile, which provides a dictionary like interface to FASTQ files, with the sequence identifer strings being the keys and the sequences and quality scores being the values.

Content

FastqFile	This class represents a file in FASTQ format.
get_sequence	Get a sequence and quality scores from a FastqFile instance.
get_sequences	Get a dictionary from a FastqFile instance, where identifiers are keys and sequence-score-tuples are values.
set_sequence	Set a sequence and a quality score array in a FastqFile instance.
set_sequences	Set sequences in a FastqFile instance from a dictionary.