get_annotated_sequence#
- biotite.sequence.io.genbank.get_annotated_sequence(gb_file: GenBankFile, format: Literal['gb', 'gp'] = 'gb', include_only: Iterable[str] | None = None) AnnotatedSequence[source]#
Get an annotated sequence by combining the ANNOTATION and ORIGIN fields of a GenBank file.
- Parameters:
- gb_fileGenBankFile
The GenBank file to read the fields from.
- format{‘gb’, ‘gp’}
Whether the file is a GenBank or GenPept file.
- include_onlyiterable object of str, optional
List of names of feature keys, which should included in the annotation. By default all features are included.
- Returns:
- annot_seqAnnotatedSequence
The annotated sequence.
Gallery#
Identification of a binding site by sequence conservation
Identification of a binding site by sequence conservation
