from_model

biotite.interface.pymol.from_model(chempy_model: Indexed, include_bonds: bool = False) → AtomArray[Any]

Convert a chempy.models.Indexed object into an AtomArray.

The returned AtomArray contains the optional annotation categories b_factor, occupancy, charge and altloc_id. No altloc ID filtering is performed.

Parameters:

chempy_modelIndexed

The chempy model.

include_bondsbool, optional

If set to true, an associated BondList will be created for the returned atom array.

Returns:

atom_arrayAtomArray

The converted structure.