`AlignmentMode`#

class biotite.application_v2.mmseqs.AlignmentMode(*values)[source]#

Bases: IntEnum

Values accepted by the alignment_mode option.

Each mode computes the quantities of the preceding one as well.

Attributes:

AUTO: Let the application choose based on the other options.
SCORE_AND_END: Compute only the alignment score and the end position.
START_AND_COVERAGE: Also compute the start position and the coverage.
SEQUENCE_IDENTITY: Also compute the sequence identity.
UNGAPPED: Compute only an ungapped alignment.

AUTO = 0#

SCORE_AND_END = 1#

START_AND_COVERAGE = 2#

SEQUENCE_IDENTITY = 3#

UNGAPPED = 4#