`StructureAlignmentType`#

class biotite.application_v2.mmseqs.StructureAlignmentType(*values)[source]#

Bases: IntEnum

Values accepted by the alignment_type option of FoldseekApp.

Attributes:

I3D: Local alignment of the 3Di sequences alone.
TM_ALIGN: Global TMalign alignment of the coordinates.
I3D_AND_AMINO_ACID: Local alignment of the 3Di and amino acid sequences combined.

I3D = 0#

TM_ALIGN = 1#

I3D_AND_AMINO_ACID = 2#