`ProfileMatchMode`#

class biotite.application_v2.mmseqs.ProfileMatchMode(*values)[source]#

Bases: IntEnum

Column selection modes accepted by the msa2profile command.

Attributes:

FIRST_SEQUENCE: Keep the columns that have a residue in the first sequence of the MSA. As the first sequence is the query, the profile is kept in the coordinate frame of the query sequence.
MATCH_RATIO: Keep the columns that have a residue in at least match_ratio of all sequences in the MSA.

FIRST_SEQUENCE = 0#

MATCH_RATIO = 1#