Structures¶
Construction of an adjacency matrix
Plotting the base pairs of a tRNA-like-structure
Biological assembly of a structure
Contact sites of protein-DNA interaction
Calculation of protein diameter
Docking biotin to streptavidin
Hydrogen bonds between protein domains
Missing residues in protein structures of DNA-PKcs
Visualization of glycosylated amino acids
Superimposition of two protein structures
Identification of lipid bilayer leaflets
Basic analysis of a MD simulation
BinaryCIF as trajectory format
Molecular visualization of caffeine
Visualization of normal modes from an elastic network model
Structural alignment of lysozyme variants using ‘Protein Blocks’
Annual releases of PDB structures
Assembly of a straight peptide from sequence
Ramachandran plot of dynein motor domain
Determination of amino acid enantiomers
Creation of an amino acid rotamer library
Solvation shells of sodium and chloride ions
Secondary structure during an MD simulation
Comparison of a tRNA-like-structure with a tRNA
Three ways to get the secondary structure of a protein
Cavity solvation in different states of HCN4
Visualization of Watson-Crick base pairs