Sequence examples

Homology and alignment

Pairwise sequence alignment of protein sequences

Pairwise sequence alignment of protein sequences

Customized visualization of a multiple sequence alignment

Customized visualization of a multiple sequence alignment

Finding homologous regions in two genomes

Finding homologous regions in two genomes

Finding homologs of a gene in a genome

Finding homologs of a gene in a genome

Phylogenetic tree of a protein family

Phylogenetic tree of a protein family

Hydropathy and conservation of ion channels

Hydropathy and conservation of ion channels

Dendrogram of a protein family

Dendrogram of a protein family

Homology search and multiple sequence alignment

Homology search and multiple sequence alignment

Conservation of binding site

Conservation of binding site

Fetching and aligning a protein from different species

Fetching and aligning a protein from different species

Display sequence similarity in a heat map

Display sequence similarity in a heat map

Plot epitope mapping data onto protein sequence alignments

Plot epitope mapping data onto protein sequence alignments

Mutual information as measure for coevolution of residues

Mutual information as measure for coevolution of residues

Polymorphisms in a gene

Polymorphisms in a gene

Sequence read quality control and mapping

Quantifying gene expression from RNA-seq data

Quantifying gene expression from RNA-seq data

Comparative genome assembly

Comparative genome assembly

Quality control of sequencing data

Quality control of sequencing data

Quality of sequence reads

Quality of sequence reads

Sequence profiles

Sequence logo of sequences with equal length

Sequence logo of sequences with equal length

Identification of a binding site by sequence conservation

Identification of a binding site by sequence conservation

Features and annotations

Feature map of a synthetic operon

Feature map of a synthetic operon

Plasmid map of a vector

Plasmid map of a vector

Visualization of a custom plasmid

Visualization of a custom plasmid

Visualization of a region in proximity to a feature

Visualization of a region in proximity to a feature

Domains of bacterial sigma factors

Domains of bacterial sigma factors

Miscellaneous

Dendrogram of a substitution matrix

Dendrogram of a substitution matrix

Calculation of codon usage

Calculation of codon usage

Biotite color schemes

Biotite color schemes

Biotite color schemes for protein sequences

Biotite color schemes for protein sequences

Statistics of local alignments and the E-value

Statistics of local alignments and the E-value

Identification of potential open reading frames

Identification of potential open reading frames