biotite.structure.check_linear_continuity¶
- biotite.structure.check_linear_continuity(array, min_len=1.2, max_len=1.8)[source]¶
Check linear (consecutive) bond continuity of atoms in atom array.
- Parameters
- arrayAtomArray
Arbitrary structure.
- min_lenfloat, optional
Minimum bond length.
- max_lenfloat, optional
Maximum bond length.
- Returns
- discontinuityndarray, dtype=int
Indices of array corresponding to atoms where the bond with the preceding atom is beyond the provided bounds.
See also
biotite.structure.filter.filter_linear_bond_continuityA function to filter for atoms preserving the continuity (used here).
biotite.structure.bonds.BondListA class that doesn’t depend on the atoms’ order to identify bonds.
