biotite.structure.check_bond_continuity¶
- biotite.structure.check_bond_continuity(array, min_len=1.2, max_len=1.8)[source]¶
Check if the peptide or phosphate backbone atoms have a non-reasonable distance to the next residue.
A large or very small distance is a very strong clue, that there is no bond between those atoms, therefore the chain is discontinued.
DEPRECATED: Please use
check_backbone_continuity()for the same functionality.- Parameters
- arrayAtomArray
The array to be checked.
- min_len, max_lenfloat, optional
The interval in which the atom-atom distance is evaluated as bond.
- Returns
- discontinuityndarray, dtype=int
Contains the indices of atoms after a discontinuity.
