biotite.sequence.io.fasta.get_alignment¶
- biotite.sequence.io.fasta.get_alignment(fasta_file, additional_gap_chars=('_',), seq_type=None)[source]¶
Get an alignment from a
FastaFileinstance.- Parameters
- fasta_fileFastaFile
The
FastaFileto be accessed.- additional_gap_charsstr, optional
The characters to be treated as gaps.
- seq_typeClass, optional
The
Sequencesubclass contained in the file. If not set, biotite will attempt to automatically detect whether a nucleotide or protein sequence is present.
- Returns
- alignmentAlignment
The alignment from the
FastaFile.
