biotite.sequence.graphics.plot_dendrogram

biotite.sequence.graphics.plot_dendrogram(axes, tree, orientation='left', use_distances=True, labels=None, label_size=None, color='black', show_distance=True, **kwargs)[source]

Plot a dendrogram from a (phylogenetic) tree.

Parameters
treeTree

The tree to be visualized

orientation{‘left’, ‘right’, ‘bottom’, ‘top’}, optional

The position of the root node in the plot

use_distancesbool, optional

If true, the distance attribute of the TreeNode objects are used as distance measure. Otherwise the topological distance is used.

labelslist of str, optional

The leaf node labels. The label of a leaf node is the entry at the position of its index attribute.

label_sizefloat, optional

The font size of the labels

colortuple or str, optional

A Matplotlib compatible color, that is used to draw the lines of the dendrogram.

show_distancebool, optional

If true, the distance from the root is shown on the corresponding axis.

**kwargs

Additional parameters that are used to draw the dendrogram lines.