.. _sphx_glr_examples_gallery_structure_nucleotide:

Nucleic acid base pairs and secondary structure
-----------------------------------------------


.. raw:: html

    <div class="sphx-glr-thumbnails">

.. thumbnail-parent-div-open

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In this example we plot a linear secondary-structure diagram of a tRNA mimic (PDB ID: 4P5J) from the turnip yellow mosaic virus (TYMV).">

.. only:: html

  .. image:: /examples/gallery/structure/nucleotide/images/thumb/sphx_glr_base_pairs_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_structure_nucleotide_base_pairs.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Plotting the base pairs of a tRNA-like-structure</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In this example we plot a secondary structure diagram annotated with Leontis-Westhof nomenclature Leontis2001 of the sarcin-ricin loop from E. coli (PDB ID: 6ZYB).">

.. only:: html

  .. image:: /examples/gallery/structure/nucleotide/images/thumb/sphx_glr_leontis_westhof_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_structure_nucleotide_leontis_westhof.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Leontis-Westhof Nomenclature</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="In this example we plot a secondary-structure diagram of a tRNA mimic (PDB ID: 4P5J) from the turnip yellow mosaic virus (TYMV) and compare it to a PHE-tRNA (PDB ID: 1EHZ).">

.. only:: html

  .. image:: /examples/gallery/structure/nucleotide/images/thumb/sphx_glr_transfer_rnas_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_structure_nucleotide_transfer_rnas.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Comparison of a tRNA-like-structure with a tRNA</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This script displays the adenine-thymine and guanine-cytosine base pairs, taken from an actual DNA 3D structure.">

.. only:: html

  .. image:: /examples/gallery/structure/nucleotide/images/thumb/sphx_glr_watson_crick_thumb.png
    :alt:

  :ref:`sphx_glr_examples_gallery_structure_nucleotide_watson_crick.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Visualization of Watson-Crick base pairs</div>
    </div>


.. thumbnail-parent-div-close

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /examples/gallery/structure/nucleotide/base_pairs
   /examples/gallery/structure/nucleotide/leontis_westhof
   /examples/gallery/structure/nucleotide/transfer_rnas
   /examples/gallery/structure/nucleotide/watson_crick