``biotite.sequence``
====================
.. currentmodule:: biotite.sequence

.. automodule:: biotite.sequence

.. currentmodule:: biotite.sequence



Sequence types
--------------

.. autosummary::
    :nosignatures:
    :toctree:

    Sequence
    NucleotideSequence
    ProteinSequence
    GeneralSequence


Alphabets
---------

.. autosummary::
    :nosignatures:
    :toctree:

    Alphabet
    LetterAlphabet
    AlphabetMapper
    AlphabetError
    common_alphabet


Sequence features
-----------------

.. autosummary::
    :nosignatures:
    :toctree:

    Feature
    Location
    Annotation
    AnnotatedSequence


Sequence search
---------------

.. autosummary::
    :nosignatures:
    :toctree:

    find_subsequence
    find_symbol
    find_symbol_first
    find_symbol_last


Miscellaneous
-------------

.. autosummary::
    :nosignatures:
    :toctree:

    CodonTable
    PositionalSequence
    PurePositionalSequence
    SequenceProfile

Subpackages
-----------

.. autosummary::

    biotite.sequence.graphics
    biotite.sequence.io
    biotite.sequence.io.genbank
    biotite.sequence.io.fastq
    biotite.sequence.io.gff
    biotite.sequence.io.fasta
    biotite.sequence.align
    biotite.sequence.phylo