``biotite``
===========
.. currentmodule:: biotite

.. automodule:: biotite

.. currentmodule:: biotite



File classes
------------

.. autosummary::
    :nosignatures:
    :toctree:

    File
    TextFile


Visualization utilities
-----------------------

.. autosummary::
    :nosignatures:
    :toctree:

    plot_scaled_text
    AdaptiveFancyArrow


Miscellaneous
-------------

.. autosummary::
    :nosignatures:
    :toctree:

    Copyable
    DeserializationError
    InvalidFileError
    SerializationError
    set_font_size_in_coord

Subpackages
-----------

.. autosummary::

    biotite.structure
    biotite.structure.alphabet
    biotite.structure.graphics
    biotite.structure.io
    biotite.structure.io.gro
    biotite.structure.io.pdbx
    biotite.structure.io.pdbqt
    biotite.structure.io.xtc
    biotite.structure.io.dcd
    biotite.structure.io.mol
    biotite.structure.io.pdb
    biotite.structure.io.trr
    biotite.structure.io.netcdf
    biotite.structure.info
    biotite.application
    biotite.application.tantan
    biotite.application.sra
    biotite.application.blast
    biotite.application.muscle
    biotite.application.mafft
    biotite.application.autodock
    biotite.application.viennarna
    biotite.application.clustalo
    biotite.application.dssp
    biotite.interface
    biotite.interface.openmm
    biotite.interface.rdkit
    biotite.interface.pymol
    biotite.sequence
    biotite.sequence.graphics
    biotite.sequence.io
    biotite.sequence.io.gff
    biotite.sequence.io.fastq
    biotite.sequence.io.fasta
    biotite.sequence.io.genbank
    biotite.sequence.phylo
    biotite.sequence.align
    biotite.database
    biotite.database.uniprot
    biotite.database.pubchem
    biotite.database.afdb
    biotite.database.rcsb
    biotite.database.entrez