biotite
=======
.. currentmodule:: biotite

.. automodule:: biotite

.. currentmodule:: biotite


File classes
------------

.. autosummary::
   :nosignatures:
   :toctree:

   File
   TextFile

Temporary files
---------------

.. autosummary::
   :nosignatures:
   :toctree:

   temp_dir
   temp_file

Visualization utilities
-----------------------

.. autosummary::
   :nosignatures:
   :toctree:

   set_font_size_in_coord
   AdaptiveFancyArrow

Miscellaneous
-------------

.. autosummary::
   :nosignatures:
   :toctree:

   Copyable
   InvalidFileError


Subpackages
-----------

.. autosummary::

   biotite.database
   biotite.database.rcsb
   biotite.database.uniprot
   biotite.database.pubchem
   biotite.database.entrez
   biotite.application
   biotite.application.clustalo
   biotite.application.sra
   biotite.application.dssp
   biotite.application.mafft
   biotite.application.muscle
   biotite.application.blast
   biotite.application.tantan
   biotite.application.viennarna
   biotite.application.autodock
   biotite.sequence
   biotite.sequence.io
   biotite.sequence.io.genbank
   biotite.sequence.io.fastq
   biotite.sequence.io.gff
   biotite.sequence.io.fasta
   biotite.sequence.graphics
   biotite.sequence.align
   biotite.sequence.phylo
   biotite.structure
   biotite.structure.io
   biotite.structure.io.netcdf
   biotite.structure.io.mol
   biotite.structure.io.dcd
   biotite.structure.io.trr
   biotite.structure.io.pdbx
   biotite.structure.io.pdbqt
   biotite.structure.io.xtc
   biotite.structure.io.npz
   biotite.structure.io.mmtf
   biotite.structure.io.gro
   biotite.structure.io.pdb
   biotite.structure.io.tng
   biotite.structure.info
   biotite.structure.graphics